mVISTA

Align and compare your sequences from multiple species

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rVISTA

Regulatory VISTA combines transcription factor binding sites database search with a comparative sequence analysis. It can be used directly or through mVISTA, Genome VISTA, or VISTA Browser

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GenomeVISTA

Compare your sequences with whole genome assemblies. It will automatically find the ortholog, obtain the alignment and VISTA plot. View your alignment together with pre-computed alignments of other species in the same interval.

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Phylo-VISTA

Analyze multiple DNA sequence alignments of sequences from different species while considering their phylogenic relationships.

wgVISTA

Align sequences up to 10Mb long (finished or draft) including microbial whole-genome assemblies.

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VISTA Browser

Allows the user to examine pre-computed alignments of whole genome assemblies. Pairwise and multiple alignments are available.

Whole Genome rVISTA

Whole Genome rVISTA evaluates which conserved between pairs of species transcription factor binding sites (TFBS) are over-represented in upstream regions in a group of genes.

Microbial genomes

Pre-computed full scaffold alignments for microbial genomes are available as the VISTA component of IMG (Integrated Microbial Genomes) developed in DOE Joint Genome Institute.

PGA

Berkeley PGA uses a comparative genomic approach first to identify, and then to determine the function of elements regulating the expression of genes affecting the cardiovascular system.

SNP-VISTA

Visualization of mutations in genes and discovery of recombination points in microbial populations.

TreeQ-Vista

Interactive tree visualization tool with functional annotation query capabilities.