We have developed several comparative genomics servers that calculate pairwise and multiple alignments of user-submitted sequences of any length and perform associated conservation analysis.
The user-friendly visualization technique implemented in our servers allows a biomedical researcher to analyze megabases of sequence alignments with underlying sequence annotation, predicted transcription factor binding sites, and evolutionary relationships.
Align and compare your sequences from multiple species
(regulatory VISTA) combines transcription factor binding sites database search with a comparative sequence analysis. It can be used directly or through mVISTA, Genome VISTA, or VISTA Browser.
compare your sequences with several whole genome assemblies. It will automatically find the ortholog, obtain the alignment and VISTA plot..
Align sequences up to 10Mb long (finished or draft) including microbial whole-genome assemblies.
Analyze multiple DNA sequence alignments of sequences from different species while considering their phylogenic relationships.