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PHYLO-VISTA

 

PHYLO-VISTA is an interactive tool for analyzing multiple DNA sequence alignments by vizualizing a similarity measure for DNA sequences for different species while considering their phylogenic relationships. Features include multiple-resolution visualization for examining an alignment and easy comparison of any subtree of sequence data within the complete alignment dataset.

Try the applet with this example.

 

 WEB SERVER

 select a multi alignment file in the multi-fasta format and press submit:

 This server runs PHYLO-VISTA v.2.2 (09/24/04).

 For help try this FAQ or contact us at phylovista@lbl.gov.

 Note that the MLAGAN multi alignment server uses PHYLO-VISTA for visualization.

 

 

 CONDITIONS REGARDING USE OF PHYLO-VISTA:
  1. If you publish results in an article based in part on the use of this applet, please cite the reference below.
  2. We encourage you to post PHYLO-VISTA visualizations of a particular dataset online as long as you include the citation listed below as well as a link to the main PHYLO-VISTA web site (http://genome.lbl.gov/vista/phylovista/). We ask, however, that you not distribute the PHYLO-VISTA applet yourself, nor incorporate the PHYLO-VISTA applet into any server that generates alignments, visualizes alignments submitted to that server, or does whole genome visualization.
  3. You are not permitted to redistribute the PHYLO-VISTA code without permission. At this time, we intend to retain the central distribution site for non-commercial users at this web site. If you would like to obtain distribution rights for commercial purposes, please contact the Technology Transfer Department at TTD@lbl.gov and reference "PHYLO-VISTA".

 

 

 CREDITS
  • Nameeta Shah is the lead programmer and developer of PHYLO-VISTA.
  • PHYLO-VISTA is the result of a collaboration involving LBNL, UC Davis, and Stanford University.
 REFERENCE