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mVISTA
rVISTA
gVISTA
wgVISTA
Phylo-VISTA
LAGAN
Home
Pairwise
Multiple
Shuffle
Instructions
Download/Cite Lagan
About mVISTA
Cite mVISTA
mVISTA Submit:
Inquiry
Your email address:
Sequence #1:
OR The GENBANK identifier(s):
Sequence #2:
OR The GENBANK identifier(s):
Required fields are marked with
Additional options
Alignment program:
LAGAN
Global pair-wise alignment of finished sequences
Shuffle-LAGAN
Glocal pair-wise alignment of finished sequences (
detects rearrangements
)
Sequence #1
Name:
Annotation:
Reverse-complement
RepeatMasker:
one-celled/do not mask
softmasked
human/primate
mouse/rat/rodent
cow/whale/artiodactyl
cat/dog/carnivore
drosophila
arabidopsis
maize
fugu
chicken
C. elegans
Sequence #2
Name:
Annotation:
Reverse-complement
RepeatMasker:
one-celled/do not mask
softmasked
human/primate
mouse/rat/rodent
cow/whale/artiodactyl
cat/dog/carnivore
drosophila
arabidopsis
maize
fugu
chicken
C. elegans
Find potential transcription factor binding sites using
rVISTA
(20Kb max)
Use translated anchoring in LAGAN/Shuffle-LAGAN (can improve the alignment of distant homologues)
RankVISTA probability threshold (0 < p < 1):
